If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ), 'gf_id' => 'HOM05D000646', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000646' ), 'data_identifier' => 'HOM05D000646', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000646', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '882', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02740' => 'bna', 'A01p42230' => 'bna', 'A03p45990' => 'bna', 'A03p61340' => 'bna', 'A03p63220' => 'bna', 'A06p05000' => 'bna', 'A07p42940' => 'bna', 'A08p35410' => 'bna', 'A09p30210' => 'bna', 'A09p66130' => 'bna', 'Aa31LG2G15480' => 'aar', 'Aa31LG2G18240' => 'aar', 'Aa31LG3G2060' => 'aar', 'Aa31LG4G7500' => 'aar', 'Aa31LG6G12920' => 'aar', 'Aa31LG8G13960' => 'aar', 'Aa31sc175G10' => 'aar', 'Aa31sc2121G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1871' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2305' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5204' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1263' => 'aag', 'Actinidia00816' => 'ach', 'Actinidia02628' => 'ach', 'Actinidia03760' => 'ach', 'Actinidia14072' => 'ach', 'Actinidia14603' => 'ach', 'Actinidia21310' => 'ach', 'Actinidia23590' => 'ach', 'Actinidia31250' => 'ach', 'Actinidia37285' => 'ach', 'Ah.01g002330' => 'amhyb', 'Ah.01g022890' => 'amhyb', 'Ah.03g149070' => 'amhyb', 'Ah.03g149080' => 'amhyb', 'Ah.03g149090' => 'amhyb', 'Ah.05g170970' => 'amhyb', 'Ah.08g211970' => 'amhyb', 'AL1G18170' => 'aly', 'AL1G55734' => 'aly', 'AL2G37690' => 'aly', 'AL3G20850' => 'aly', 'AL3G36360' => 'aly', 'AL3G49420' => 'aly', 'AL3G49430' => 'aly', 'AL6G42220' => 'aly', 'AL6G45620' => 'aly', 'AL7G15080' => 'aly', 'AL7G16220' => 'aly', 'AL7G19520' => 'aly', 'Aqoxy2G01884' => 'aox', 'Aqoxy4G03176' => 'aox', 'Aqoxy6G00243' => 'aox', 'Aqoxy6G02195' => 'aox', 'Aqoxy7G03681' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0JX7DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20061H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PJ5SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5D1G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W0K3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94S7W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4JY0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8ULA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAS3CI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM1FBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QIQ2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R18LRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB3H4T' => 'arhy', 'AT1G07890' => 'ath', 'AT1G77490' => 'ath', 'AT3G09640' => 'ath', 'AT4G08390' => 'ath', 'AT4G32320' => 'ath', 'AT4G35000' => 'ath', 'AT4G35970' => 'ath', 'ATR0584G151' => 'atr', 'ATR0594G226' => 'atr', 'ATR0712G050' => 'atr', 'ATR1120G042' => 'atr', 'Atru.chr13.1501' => 'acertr', 'Atru.chr3.3731' => 'acertr', 'Atru.chr3.3736' => 'acertr', 'Atru.chr3.850' => 'acertr', 'Atru.chr5.3306' => 'acertr', 'Atru.chr7.2425' => 'acertr', 'Atru.chr8.2549' => 'acertr', 'AUR62003342' => 'cqu', 'AUR62003343' => 'cqu', 'AUR62003345' => 'cqu', 'AUR62003346' => 'cqu', 'AUR62006493' => 'cqu', 'AUR62010053' => 'cqu', 'AUR62012394' => 'cqu', 'AUR62013045' => 'cqu', 'AUR62014318' => 'cqu', 'AUR62019059' => 'cqu', 'AUR62025041' => 'cqu', 'AUR62029490' => 'cqu', 'AUR62029491' => 'cqu', 'AUR62031510' => 'cqu', 'AUR62043592' => 'cqu', 'AUR62043594' => 'cqu', 'AUR62043595' => 'cqu', 'AUR62044027' => 'cqu', 'AUR62044028' => 'cqu', 'BcaB01g01344' => 'bca', 'BcaB02g06703' => 'bca', 'BcaB03g13361' => 'bca', 'BcaB03g15949' => 'bca', 'BcaB05g24150' => 'bca', 'BcaB08g34665' => 'bca', 'BcaC01g02987' => 'bca', 'BcaC01g06873' => 'bca', 'BcaC01g06874' => 'bca', 'BcaC01g06875' => 'bca', 'BcaC04g20904' => 'bca', 'BcaC04g24164' => 'bca', 'BcaC05g24703' => 'bca', 'BcaC05g24706' => 'bca', 'BcaC07g41970' => 'bca', 'BcaC07g42502' => 'bca', 'BcaC08g47608' => 'bca', 'BcaC09g48133' => 'bca', 'BcaNung00775' => 'bca', 'BcaNung00776' => 'bca', 'BcaNung02368' => 'bca', 'BcaNung03588' => 'bca', 'BcaNung03953' => 'bca', 'BolC1t00290H' => 'bol', 'BolC1t05443H' => 'bol', 'BolC2t07854H' => 'bol', 'BolC3t18020H' => 'bol', 'BolC5t29356H' => 'bol', 'BolC6t40176H' => 'bol', 'BolC7t46363H' => 'bol', 'BolC7t46514H' => 'bol', 'BolC8t47144H' => 'bol', 'BolC8t52558H' => 'bol', 'BolC9t52980H' => 'bol', 'BolC9t56651H' => 'bol', 'BraA01t00260Z' => 'bra', 'BraA01t04291Z' => 'bra', 'BraA03t13728Z' => 'bra', 'BraA03t15178Z' => 'bra', 'BraA03t15399Z' => 'bra', 'BraA06t23706Z' => 'bra', 'BraA07t31815Z' => 'bra', 'BraA08t35447Z' => 'bra', 'BraA09t38586Z' => 'bra', 'BraA09t41951Z' => 'bra', 'C01p03040' => 'bna', 'C02p17400' => 'bna', 'C03p57450' => 'bna', 'C05p05940' => 'bna', 'C06p51560' => 'bna', 'C07p59190' => 'bna', 'C07p60860' => 'bna', 'C08p03430' => 'bna', 'C08p50290' => 'bna', 'C09p00460' => 'bna', 'C09p38140' => 'bna', 'CAN.G1274.26' => 'can', 'CAN.G1274.27' => 'can', 'CAN.G2.25' => 'can', 'CAN.G200.10' => 'can', 'CAN.G200.9' => 'can', 'CAN.G350.38' => 'can', 'CAN.G426.27' => 'can', 'CAN.G588.68' => 'can', 'CAN.G9.29' => 'can', 'CANSAT01G3003' => 'cansat', 'CANSAT25G0187' => 'cansat', 'CANSAT25G0352' => 'cansat', 'CANSAT25G1311' => 'cansat', 'CANSAT25G3731' => 'cansat', 'CANSAT54G2354' => 'cansat', 'CANSAT56G3439' => 'cansat', 'CANSAT80G2772' => 'cansat', 'CARHR007700' => 'chi', 'CARHR071010' => 'chi', 'CARHR084050' => 'chi', 'CARHR106960' => 'chi', 'CARHR240220' => 'chi', 'CARHR243280' => 'chi', 'CARHR244360' => 'chi', 'CARHR259460' => 'chi', 'Carub.0001s0723' => 'cru', 'Carub.0002s2438' => 'cru', 'Carub.0003s0873' => 'cru', 'Carub.0003s3048' => 'cru', 'Carub.0003s3050' => 'cru', 'Carub.0006s2695' => 'cru', 'Carub.0007s0426' => 'cru', 'Carub.0007s0531' => 'cru', 'Carub.0007s0826' => 'cru', 'Ca_13987_v3' => 'car', 'Ca_15737_v3' => 'car', 'Ca_16568_v3' => 'car', 'Ca_19062_v3' => 'car', 'Ca_19233_v3' => 'car', 'Ca_24917_v3' => 'car', 'Ca_27917_v3' => 'car', 'CBR_g11895' => 'cbr', 'CBR_g29363' => 'cbr', 'CBR_g30060' => 'cbr', 'CBR_g40382' => 'cbr', 'CBR_g540' => 'cbr', 'Cc01_g11800' => 'ccan', 'Cc02_g16260' => 'ccan', 'Cc06_g03490' => 'ccan', 'Cc07_g11020' => 'ccan', 'Cc08_g00640' => 'ccan', 'Cc10_g12080' => 'ccan', 'CDE02G0087' => 'cde', 'CDE02G1916' => 'cde', 'CDE04G0875' => 'cde', 'CDE04G1386' => 'cde', 'CDE04G2247' => 'cde', 'CDE07G1143' => 'cde', 'CDE07G1956' => 'cde', 'CDE09G0060' => 'cde', 'Cfa005233' => 'cfa', 'Cfa022785' => 'cfa', 'Cfa023372' => 'cfa', 'Cfa026262' => 'cfa', 'Ciclev10001194m.g' => 'ccl', 'Ciclev10008868m.g' => 'ccl', 'Ciclev10012554m.g' => 'ccl', 'Ciclev10026205m.g' => 'ccl', 'Ciclev10028990m.g' => 'ccl', 'Ciclev10030198m.g' => 'ccl', 'CiPaw.05G081100' => 'cil', 'CiPaw.06G122900' => 'cil', 'CiPaw.07G223200' => 'cil', 'CiPaw.08G130200' => 'cil', 'CiPaw.09G180800' => 'cil', 'CiPaw.13G105000' => 'cil', 'CiPaw.15G087300' => 'cil', 'CiPaw.16G066800' => 'cil', 'ClCG01G020440' => 'cla', 'ClCG02G004180' => 'cla', 'ClCG02G020760' => 'cla', 'ClCG08G005810' => 'cla', 'ClCG08G013360' => 'cla', 'COL.COLO4_17322' => 'col', 'COL.COLO4_18382' => 'col', 'COL.COLO4_18858' => 'col', 'COL.COLO4_22457' => 'col', 'COL.COLO4_24716' => 'col', 'COL.COLO4_27091' => 'col', 'Cpa.g.c30593' => 'cpa', 'Cpa.g.sc139.46' => 'cpa', 'Cpa.g.sc217.1' => 'cpa', 'Cpa.g.sc37.148' => 'cpa', 'Cpa.g.sc6.282' => 'cpa', 'Cpa.g.sc64.102' => 'cpa', 'Cpa.g.sc64.103' => 'cpa', 'Cre01.g045700' => 'cre', 'Cre02.g087700' => 'cre', 'Cre06.g285150' => 'cre', 'Cre09.g401886' => 'cre', 'CsaV3_1G033510' => 'csa', 'CsaV3_2G032090' => 'csa', 'CsaV3_6G021870' => 'csa', 'CsaV3_6G034310' => 'csa', 'CsaV3_6G047320' => 'csa', 'CsaV3_7G000930' => 'csa', 'CSS0006153' => 'camsi', 'CSS0007354' => 'camsi', 'CSS0007930' => 'camsi', 'CSS0010284' => 'camsi', 'CSS0034174' => 'camsi', 'CSS0034392' => 'camsi', 'CSS0040488' => 'camsi', 'CSS0041685' => 'camsi', 'CSS0046036' => 'camsi', 'DCAR_000433' => 'dca', 'DCAR_003164' => 'dca', 'DCAR_005477' => 'dca', 'DCAR_006029' => 'dca', 'DCAR_010287' => 'dca', 'DCAR_014035' => 'dca', 'DCAR_015567' => 'dca', 'DCAR_018843' => 'dca', 'Dinv02706' => 'din', 'Dinv04504' => 'din', 'Dinv05618' => 'din', 'Dinv08650' => 'din', 'Dinv14098' => 'din', 'Dinv14633' => 'din', 'Dinv14634' => 'din', 'Dinv27294' => 'din', 'Dinv32811' => 'din', 'Dinv35705' => 'din', 'Dinv40113' => 'din', 'Duzib052G0534' => 'dzi', 'Duzib093G0248' => 'dzi', 'Duzib106G1286' => 'dzi', 'Duzib116G0615' => 'dzi', 'Duzib132G0364' => 'dzi', 'Duzib150G0027' => 'dzi', 'Duzib150G0647' => 'dzi', 'Duzib168G0539' => 'dzi', 'Duzib187G1113' => 'dzi', 'Duzib248G1509' => 'dzi', 'Duzib251G0310' => 'dzi', 'Duzib264G1073' => 'dzi', 'ECA236G4069' => 'eca', 'ECA246G0850' => 'eca', 'ECA247G1885' => 'eca', 'EL10Ac1g01036' => 'bvu', 'EL10Ac2g04229' => 'bvu', 'EL10Ac6g15497' => 'bvu', 'EL10Ac6g15498' => 'bvu', 'EL10Ac6g15500' => 'bvu', 'EL10Ac6g15501' => 'bvu', 'EL10Ac7g17337' => 'bvu', 'EL10Ac9g21393' => 'bvu', 'EL10Ac9g21981' => 'bvu', 'EL10Ac9g22399' => 'bvu', 'Eucgr.A01180' => 'egr', 'Eucgr.A02691' => 'egr', 'Eucgr.B02456' => 'egr', 'Eucgr.C01738' => 'egr', 'Eucgr.C01740' => 'egr', 'Eucgr.C02673' => 'egr', 'Eucgr.E00522' => 'egr', 'Eucgr.E00760' => 'egr', 'Eucgr.F04344' => 'egr', 'Eucgr.I01408' => 'egr', 'Eucgr.J00965' => 'egr', 'Eucgr.J02463' => 'egr', 'FAN02G3303' => 'fan', 'FAN05G1016' => 'fan', 'FAN09G2226' => 'fan', 'FAN11G2822' => 'fan', 'FAN14G0030' => 'fan', 'FAN15G1003' => 'fan', 'FAN15G1778' => 'fan', 'FAN15G2271' => 'fan', 'FAN16G2927' => 'fan', 'FAN19G0633' => 'fan', 'FAN20G1002' => 'fan', 'FAN20G2439' => 'fan', 'FAN21G1116' => 'fan', 'FAN23G1910' => 'fan', 'FAN24G0627' => 'fan', 'FAN24G1649' => 'fan', 'FAN24G2162' => 'fan', 'FAN25G1991' => 'fan', 'FAN26G2406' => 'fan', 'FAN27G0023' => 'fan', 'FAN27G0875' => 'fan', 'FAN27G2649' => 'fan', 'FAN28G0856' => 'fan', 'FvH4_1g11490' => 'fve', 'FvH4_1g11491' => 'fve', 'FvH4_2g01310' => 'fve', 'FvH4_2g27340' => 'fve', 'FvH4_2g29080' => 'fve', 'FvH4_3g33910' => 'fve', 'FvH4_6g15200' => 'fve', 'Glyma.01G162400' => 'gma', 'Glyma.01G164600' => 'gma', 'Glyma.01G164700' => 'gma', 'Glyma.04G066751' => 'gma', 'Glyma.04G248300' => 'gma', 'Glyma.06G068200' => 'gma', 'Glyma.06G114400' => 'gma', 'Glyma.11G078400' => 'gma', 'Glyma.11G080901' => 'gma', 'Glyma.11G107200' => 'gma', 'Glyma.11G150243' => 'gma', 'Glyma.12G032300' => 'gma', 'Glyma.12G073100' => 'gma', 'Glyma.U031318' => 'gma', 'Gohir.A01G167400' => 'ghi', 'Gohir.A02G172100' => 'ghi', 'Gohir.A03G204900' => 'ghi', 'Gohir.A05G100600' => 'ghi', 'Gohir.A05G236200' => 'ghi', 'Gohir.A06G045600' => 'ghi', 'Gohir.A06G098220' => 'ghi', 'Gohir.A08G195700' => 'ghi', 'Gohir.A08G195900' => 'ghi', 'Gohir.A08G196000' => 'ghi', 'Gohir.A08G196100' => 'ghi', 'Gohir.A13G229900' => 'ghi', 'Gohir.D01G158600' => 'ghi', 'Gohir.D02G226200' => 'ghi', 'Gohir.D03G008000' => 'ghi', 'Gohir.D04G115900' => 'ghi', 'Gohir.D05G100400' => 'ghi', 'Gohir.D05G238400' => 'ghi', 'Gohir.D06G046100' => 'ghi', 'Gohir.D06G100300' => 'ghi', 'Gohir.D08G213000' => 'ghi', 'Gohir.D08G213100' => 'ghi', 'Gohir.D08G213200' => 'ghi', 'Gohir.D13G235400' => 'ghi', 'Gorai.002G196800' => 'gra', 'Gorai.003G008200' => 'gra', 'Gorai.004G227100' => 'gra', 'Gorai.004G227200' => 'gra', 'Gorai.004G227300' => 'gra', 'Gorai.005G254100' => 'gra', 'Gorai.009G104500' => 'gra', 'Gorai.009G246900' => 'gra', 'Gorai.009G420500' => 'gra', 'Gorai.010G051400' => 'gra', 'Gorai.010G115200' => 'gra', 'Gorai.013G266100' => 'gra', 'GSVIVG01008846001' => 'vvi', 'GSVIVG01018740001' => 'vvi', 'GSVIVG01018743001' => 'vvi', 'GSVIVG01024035001' => 'vvi', 'GSVIVG01025104001' => 'vvi', 'GSVIVG01025551001' => 'vvi', 'GSVIVG01035858001' => 'vvi', 'HanXRQChr02g0044461' => 'han', 'HanXRQChr05g0133141' => 'han', 'HanXRQChr05g0148761' => 'han', 'HanXRQChr07g0206051' => 'han', 'HanXRQChr08g0229951' => 'han', 'HanXRQChr13g0402951' => 'han', 'HanXRQChr15g0478771' => 'han', 'HanXRQChr15g0483901' => 'han', 'HanXRQChr17g0544251' => 'han', 'Haze_02151' => 'cav', 'Haze_03735' => 'cav', 'Haze_03745' => 'cav', 'Haze_17504' => 'cav', 'Haze_20659' => 'cav', 'Haze_20662' => 'cav', 'Haze_21520' => 'cav', 'Haze_23951' => 'cav', 'Hma1.2p1_0000F.1_g000020' => 'hma', 'Hma1.2p1_0000F.1_g000030' => 'hma', 'Hma1.2p1_0129F.1_g060350' => 'hma', 'Hma1.2p1_0163F.1_g072370' => 'hma', 'Hma1.2p1_0315F.1_g122290' => 'hma', 'Hma1.2p1_0407F.1_g146230' => 'hma', 'Hma1.2p1_0481F.1_g162180' => 'hma', 'Hma1.2p1_1731F.1_g299740' => 'hma', 'Hma1.2p1_2898F.1_g329990' => 'hma', 'HPP92_001034' => 'vpl', 'HPP92_012713' => 'vpl', 'HPP92_012719' => 'vpl', 'HPP92_012938' => 'vpl', 'HPP92_016111' => 'vpl', 'HPP92_017939' => 'vpl', 'Hund00027' => 'sun', 'Hund01390' => 'sun', 'Hund01392' => 'sun', 'Hund06429' => 'sun', 'Hund13395' => 'sun', 'Hund14060' => 'sun', 'Hund17304' => 'sun', 'Hund20151' => 'sun', 'Hund25808' => 'sun', 'Hund26798' => 'sun', 'Lalb_Chr01g0004071' => 'lal', 'Lalb_Chr03g0025131' => 'lal', 'Lalb_Chr03g0027041' => 'lal', 'Lalb_Chr05g0212291' => 'lal', 'Lalb_Chr08g0241361' => 'lal', 'Lalb_Chr19g0137521' => 'lal', 'Lalb_Chr19g0139161' => 'lal', 'Lalb_Chr23g0268511' => 'lal', 'Lalb_Chr23g0271061' => 'lal', 'Lj1g0011836' => 'lja', 'Lj1g0016464' => 'lja', 'Lj2A1040T27' => 'lonja', 'Lj2A106T35' => 'lonja', 'Lj2g0020786' => 'lja', 'Lj3g0012950' => 'lja', 'Lj3g0013273' => 'lja', 'Lj4A222T54' => 'lonja', 'Lj4A632T45' => 'lonja', 'Lj7A723T40' => 'lonja', 'Lj7C343T16' => 'lonja', 'Lj7C343T17' => 'lonja', 'Lj9A366G72' => 'lonja', 'Lj9A392G37' => 'lonja', 'Lsat_1_v5_gn_3_46681' => 'lsa', 'Lsat_1_v5_gn_3_71881' => 'lsa', 'Lsat_1_v5_gn_3_72100' => 'lsa', 'Lsat_1_v5_gn_3_72120' => 'lsa', 'Lsat_1_v5_gn_3_72581' => 'lsa', 'Lsat_1_v5_gn_4_9120' => 'lsa', 'Lsat_1_v5_gn_6_21420' => 'lsa', 'Lsat_1_v5_gn_6_95861' => 'lsa', 'Lsat_1_v5_gn_7_53801' => 'lsa', 'Lsat_1_v5_gn_8_130100' => 'lsa', 'Lsat_1_v5_gn_8_74541' => 'lsa', 'Lsat_1_v5_gn_8_74821' => 'lsa', 'Lsat_1_v5_gn_8_74841' => 'lsa', 'Lsat_1_v5_gn_8_76220' => 'lsa', 'Lsat_1_v5_gn_8_76800' => 'lsa', 'Lsat_1_v5_gn_8_76840' => 'lsa', 'Lsat_1_v5_gn_8_77320' => 'lsa', 'Lsat_1_v5_gn_9_20460' => 'lsa', 'Manes.01G147300' => 'mes', 'Manes.02G165100' => 'mes', 'Manes.04G026800' => 'mes', 'Manes.08G002700' => 'mes', 'Manes.11G094500' => 'mes', 'Manes.11G139700' => 'mes', 'Manes.16G121900' => 'mes', 'Manes.18G078800' => 'mes', 'Manes.18G083605' => 'mes', 'Mapoly0015s0180' => 'mpo', 'Mapoly0030s0090' => 'mpo', 'Mapoly0059s0017' => 'mpo', 'Mapoly0188s0011' => 'mpo', 'MBI03_g07926_MAGBIO' => 'mbi', 'MBI03_g28524_MAGBIO' => 'mbi', 'MBI03_g38907_MAGBIO' => 'mbi', 'MBI04_g29345_MAGBIO' => 'mbi', 'MBI06_g04143_MAGBIO' => 'mbi', 'MBI09_g41705_MAGBIO' => 'mbi', 'MBI09_g44999_MAGBIO' => 'mbi', 'MBI09_g46219_MAGBIO' => 'mbi', 'MBI12_g36979_MAGBIO' => 'mbi', 'MBI14_g40208_MAGBIO' => 'mbi', 'MBI14_g44532_MAGBIO' => 'mbi', 'MBI19_g16211_MAGBIO' => 'mbi', 'MBI19_g45013_MAGBIO' => 'mbi', 'MCO01G127' => 'mco', 'MCO02G325' => 'mco', 'MCO03G155' => 'mco', 'MCO04G017' => 'mco', 'MCO07G104' => 'mco', 'MCO16G574' => 'mco', 'MD00G1029300' => 'mdo', 'MD00G1029400' => 'mdo', 'MD00G1059000' => 'mdo', 'MD00G1173600' => 'mdo', 'MD02G1127800' => 'mdo', 'MD03G1108200' => 'mdo', 'MD03G1108300' => 'mdo', 'MD04G1104900' => 'mdo', 'MD05G1120800' => 'mdo', 'MD08G1150400' => 'mdo', 'MD11G1121400' => 'mdo', 'MD12G1125600' => 'mdo', 'MD15G1125400' => 'mdo', 'MD15G1242900' => 'mdo', 'MD15G1243000' => 'mdo', 'MD15G1345800' => 'mdo', 'Medtr3g088160' => 'mtr', 'Medtr3g107060' => 'mtr', 'Medtr3g111470' => 'mtr', 'Medtr4g061140' => 'mtr', 'Medtr4g073410' => 'mtr', 'Medtr5g008330' => 'mtr', 'Medtr5g008440' => 'mtr', 'Medtr5g022510' => 'mtr', 'Medtr8g087680' => 'mtr', 'MELO3C007923.2' => 'cme', 'MELO3C010627.2' => 'cme', 'MELO3C011261.2' => 'cme', 'MELO3C013362.2' => 'cme', 'MELO3C020719.2' => 'cme', 'MELO3C025724.2' => 'cme', 'Migut.A00043' => 'egut', 'Migut.B00088' => 'egut', 'Migut.C01118' => 'egut', 'Migut.D02170' => 'egut', 'Migut.J00409' => 'egut', 'Migut.N02635' => 'egut', 'Migut.O00733' => 'egut', 'MSTRG.12616' => 'ama', 'MSTRG.1434' => 'ama', 'MSTRG.16900' => 'ama', 'MSTRG.17856' => 'ama', 'MSTRG.18627' => 'ama', 'MSTRG.21156' => 'ama', 'MSTRG.22405' => 'ama', 'MSTRG.25375' => 'ama', 'MSTRG.3607' => 'ama', 'Nitab4.5_0000022g0310' => 'nta', 'Nitab4.5_0000209g0170' => 'nta', 'Nitab4.5_0000270g0080' => 'nta', 'Nitab4.5_0000372g0040' => 'nta', 'Nitab4.5_0001142g0030' => 'nta', 'Nitab4.5_0001889g0090' => 'nta', 'Nitab4.5_0001892g0070' => 'nta', 'Nitab4.5_0001996g0010' => 'nta', 'Nitab4.5_0003187g0040' => 'nta', 'Nitab4.5_0003187g0070' => 'nta', 'Nitab4.5_0005010g0010' => 'nta', 'Nitab4.5_0006152g0030' => 'nta', 'Nitab4.5_0007267g0040' => 'nta', 'Nitab4.5_0010580g0030' => 'nta', 'Nitab4.5_0011292g0010' => 'nta', 'Nitab4.5_0012050g0010' => 'nta', 'Nitab4.5_0018666g0010' => 'nta', 'Nn1g08858' => 'nnu', 'Nn1g08870' => 'nnu', 'Nn1g09873' => 'nnu', 'Nn2g10508' => 'nnu', 'Nn5g28350' => 'nnu', 'Nn5g30762' => 'nnu', 'Nn8g39481' => 'nnu', 'Oeu001528.1' => 'oeu', 'Oeu007454.1' => 'oeu', 'Oeu008325.1' => 'oeu', 'Oeu011650.1' => 'oeu', 'Oeu016592.1' => 'oeu', 'Oeu017389.2' => 'oeu', 'Oeu029548.1' => 'oeu', 'Oeu038933.1' => 'oeu', 'Oeu042700.2' => 'oeu', 'Oeu048482.1' => 'oeu', 'Oeu051251.1' => 'oeu', 'Oeu054134.3' => 'oeu', 'Oeu055663.1' => 'oeu', 'Os02g0553200' => 'osa', 'Os03g0285700' => 'osa', 'Os04g0223300' => 'osa', 'Os04g0434800' => 'osa', 'Os07g0694700' => 'osa', 'Os08g0522400' => 'osa', 'Os08g0549100' => 'osa', 'Os09g0538600' => 'osa', 'Os12g0178100' => 'osa', 'Os12g0178200' => 'osa', 'Peaxi162Scf00005g00505' => 'pax', 'Peaxi162Scf00051g00126' => 'pax', 'Peaxi162Scf00072g00222' => 'pax', 'Peaxi162Scf00328g00618' => 'pax', 'Peaxi162Scf00328g00622' => 'pax', 'Peaxi162Scf00362g00830' => 'pax', 'Peaxi162Scf00785g00113' => 'pax', 'PGR004G2804' => 'pgr', 'PGR031G0023' => 'pgr', 'PGR044G1179' => 'pgr', 'PGR102G0301' => 'pgr', 'PGR102G2521' => 'pgr', 'PGR119G0986' => 'pgr', 'PGR142G3454' => 'pgr', 'PGSC0003DMG400000894' => 'stu', 'PGSC0003DMG400003645' => 'stu', 'PGSC0003DMG400006175' => 'stu', 'PGSC0003DMG400030056' => 'stu', 'PGSC0003DMG400030063' => 'stu', 'PGSC0003DMG400032777' => 'stu', 'PGSC0003DMG401001731' => 'stu', 'PGSC0003DMG402003646' => 'stu', 'Phvul.002G104700' => 'pvu', 'Phvul.002G107000' => 'pvu', 'Phvul.009G093000' => 'pvu', 'Phvul.009G126500' => 'pvu', 'Phvul.011G035000' => 'pvu', 'Phvul.011G071300' => 'pvu', 'Potri.002G081900' => 'ptr', 'Potri.004G174500' => 'ptr', 'Potri.005G112200' => 'ptr', 'Potri.005G179200' => 'ptr', 'Potri.006G089000' => 'ptr', 'Potri.006G132200' => 'ptr', 'Potri.006G254500' => 'ptr', 'Potri.009G015400' => 'ptr', 'Potri.009G134100' => 'ptr', 'Potri.016G084800' => 'ptr', 'Pp3c17_7560' => 'ppa', 'Pp3c1_26270' => 'ppa', 'Pp3c1_40650' => 'ppa', 'Pp3c20_2050' => 'ppa', 'Pp3c20_2100' => 'ppa', 'Pp3s42_140' => 'ppa', 'PRCOL_00002864' => 'pco', 'PRCOL_00003218' => 'pco', 'PRCOL_00005724' => 'pco', 'PRCOL_00005887' => 'pco', 'Prupe.1G481000' => 'ppe', 'Prupe.1G493900' => 'ppe', 'Prupe.6G091600' => 'ppe', 'Prupe.6G242200' => 'ppe', 'Prupe.7G171100' => 'ppe', 'Prupe.7G171200' => 'ppe', 'Prupe.8G164400' => 'ppe', 'Psat0s4922g0040' => 'psa', 'Psat2g153360' => 'psa', 'Psat5g028800' => 'psa', 'Psat5g086720' => 'psa', 'Psat7g223000' => 'psa', 'PSO017G5755' => 'pso', 'PSO170G0062' => 'pso', 'PSO170G1755' => 'pso', 'PSO170G5186' => 'pso', 'PSO339G5598' => 'pso', 'PSO384G2784' => 'pso', 'PSO528G0255' => 'pso', 'PSO541G5238' => 'pso', 'PSO675G8844' => 'pso', 'PSO700G0109' => 'pso', 'QL01p036103' => 'qlo', 'QL02p021720' => 'qlo', 'QL06p051040' => 'qlo', 'QL07p045384' => 'qlo', 'QL07p045395' => 'qlo', 'QL09p034027' => 'qlo', 'QL11p050032' => 'qlo', 'RcHm_v2.0_Chr2g0099101' => 'rch', 'RcHm_v2.0_Chr2g0099111' => 'rch', 'RcHm_v2.0_Chr3g0468551' => 'rch', 'RcHm_v2.0_Chr5g0061461' => 'rch', 'RcHm_v2.0_Chr6g0251981' => 'rch', 'RcHm_v2.0_Chr6g0252051' => 'rch', 'RcHm_v2.0_Chr6g0252121' => 'rch', 'RcHm_v2.0_Chr6g0252131' => 'rch', 'RcHm_v2.0_Chr6g0252201' => 'rch', 'RcHm_v2.0_Chr6g0296151' => 'rch', 'RcHm_v2.0_Chr6g0297961' => 'rch', 'Rhsim01G0221600' => 'rsi', 'Rhsim04G0151900' => 'rsi', 'Rhsim06G0102100' => 'rsi', 'Rhsim07G0158100' => 'rsi', 'Rhsim07G0158200' => 'rsi', 'Rhsim10G0209400' => 'rsi', 'Rhsim13G0090600' => 'rsi', 'RhsimUnG0138800' => 'rsi', 'Sabra04G0116400' => 'sbr', 'Sabra05G0092000' => 'sbr', 'Sabra05G0135600' => 'sbr', 'Sabra09G0010100' => 'sbr', 'Sabra16G0091600' => 'sbr', 'Sabra16G0091700' => 'sbr', 'SalBow1G1584' => 'sbo', 'SalBow3G0133' => 'sbo', 'SalBow3G2841' => 'sbo', 'SalBow4G2668' => 'sbo', 'SalBow5G5151' => 'sbo', 'SalBow7G0132' => 'sbo', 'Sc02g0004920' => 'sci', 'Sc09g0008260' => 'sci', 'Sc16g0002000' => 'sci', 'Sc18g0006490' => 'sci', 'Sc20g0004160' => 'sci', 'Sc21g0000140' => 'sci', 'Sed0001685' => 'sed', 'Sed0001909' => 'sed', 'Sed0004709' => 'sed', 'Sed0006008' => 'sed', 'Sed0006311' => 'sed', 'Sed0015946' => 'sed', 'Sed0019213' => 'sed', 'Sed0021051' => 'sed', 'Sed0021291' => 'sed', 'Sed0024322' => 'sed', 'SEGI_00164' => 'sgi', 'SEGI_08847' => 'sgi', 'SEGI_27836' => 'sgi', 'SEGI_28966' => 'sgi', 'SEGI_35227' => 'sgi', 'SEGI_36731' => 'sgi', 'SGA_v2.0_scaffold126G33889' => 'sas', 'SGA_v2.0_scaffold24G10452' => 'sas', 'SGA_v2.0_scaffold2G00913' => 'sas', 'SGA_v2.0_scaffold316G48411' => 'sas', 'SGA_v2.0_scaffold32G13275' => 'sas', 'SGA_v2.0_scaffold52G18957' => 'sas', 'SGA_v2.0_scaffold58G20379' => 'sas', 'SGA_v2.0_scaffold64G21930' => 'sas', 'SMO228G0005' => 'smo', 'SMO270G0014' => 'smo', 'SMO343G0103' => 'smo', 'SMO347G0461' => 'smo', 'SMO367G0265' => 'smo', 'SMO367G0848' => 'smo', 'SMO367G1067' => 'smo', 'Solyc01g111510.3' => 'sly', 'Solyc02g083620.3' => 'sly', 'Solyc02g083630.3' => 'sly', 'Solyc06g005150.3' => 'sly', 'Solyc06g005160.4' => 'sly', 'Solyc06g060260.3' => 'sly', 'Solyc08g059760.3' => 'sly', 'Solyc09g007270.3' => 'sly', 'Solyc11g018550.4' => 'sly', 'Sopen01g053550' => 'spe', 'Sopen02g028400' => 'spe', 'Sopen02g028410' => 'spe', 'Sopen06g001140' => 'spe', 'Sopen06g001150' => 'spe', 'Sopen06g020380' => 'spe', 'Sopen08g009450' => 'spe', 'Sopen09g002140' => 'spe', 'Sopen09g002160' => 'spe', 'Sopen11g009490' => 'spe', 'Sp1g06570' => 'spa', 'Sp3g07970' => 'spa', 'Sp3g30010' => 'spa', 'Sp5g32650' => 'spa', 'Sp6g09510' => 'spa', 'Sp7g30080' => 'spa', 'Sp7g32760' => 'spa', 'Sp7g33740' => 'spa', 'TAR376G0560' => 'tar', 'TAR383G0487' => 'tar', 'TAR625G0806' => 'tar', 'TAR628G0137' => 'tar', 'TAR628G1259' => 'tar', 'TAR633G1188' => 'tar', 'TAR636G0500' => 'tar', 'THA.LOC104800618' => 'tha', 'THA.LOC104803658' => 'tha', 'THA.LOC104804273' => 'tha', 'THA.LOC104804329' => 'tha', 'THA.LOC104813151' => 'tha', 'THA.LOC104813669' => 'tha', 'THA.LOC104815756' => 'tha', 'THA.LOC104826354' => 'tha', 'Thecc.01G015100' => 'tca', 'Thecc.02G061300' => 'tca', 'Thecc.05G053200' => 'tca', 'Thecc.08G128000' => 'tca', 'Thecc.09G024900' => 'tca', 'Thecc.09G336400' => 'tca', 'Thhalv10008402m.g' => 'esa', 'Thhalv10018581m.g' => 'esa', 'Thhalv10021381m.g' => 'esa', 'Thhalv10022797m.g' => 'esa', 'Thhalv10023023m.g' => 'esa', 'Thhalv10025686m.g' => 'esa', 'Thhalv10025911m.g' => 'esa', 'Thhalv10025942m.g' => 'esa', 'Thhalv10028759m.g' => 'esa', 'TPR.G19293' => 'tpr', 'TPR.G2980' => 'tpr', 'TPR.G3114' => 'tpr', 'TPR.G345' => 'tpr', 'TPR.G39232' => 'tpr', 'TWI09G0443' => 'twi', 'TWI31G0766' => 'twi', 'TWI31G0937' => 'twi', 'TWI32G0975' => 'twi', 'TWI34G0736' => 'twi', 'TWI34G1742' => 'twi', 'TWI74G0611' => 'twi', 'TWI79G0557' => 'twi', 'unitig_22.g6672' => 'ugi', 'unitig_37.g12439' => 'ugi', 'unitig_46.g18489' => 'ugi', 'unitig_747.g21495' => 'ugi', 'unitig_747.g22009' => 'ugi', 'unitig_748.g8183' => 'ugi', 'vmacro03148' => 'vma', 'vmacro05176' => 'vma', 'vmacro08692' => 'vma', 'vmacro08693' => 'vma', 'vmacro14483' => 'vma', 'vmacro17356' => 'vma', 'vmacro17357' => 'vma', 'vmacro22149' => 'vma', 'VMungo1127G0864' => 'vmu', 'VMungo1215G0030' => 'vmu', 'VMungo1215G1313' => 'vmu', 'VMungo1309G2095' => 'vmu', 'VMungo1309G3052' => 'vmu', 'Zm00001eb013080' => 'zma', 'Zm00001eb028900' => 'zma', 'Zm00001eb035440' => 'zma', 'Zm00001eb055480' => 'zma', 'Zm00001eb082560' => 'zma', 'Zm00001eb102190' => 'zma', 'Zm00001eb112040' => 'zma', 'Zm00001eb190040' => 'zma', 'Zm00001eb202790' => 'zma', 'Zm00001eb210050' => 'zma', 'Zm00001eb243590' => 'zma', 'Zm00001eb294460' => 'zma', 'Zm00001eb303870' => 'zma', 'Zm00001eb315550' => 'zma', 'Zm00001eb367350' => 'zma', 'Zm00001eb397180' => 'zma', 'Zm00001eb408280' => 'zma', 'Zm00001eb413440' => 'zma', 'Zm00001eb419790' => 'zma' ) $gf_id = 'HOM05D000646' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000646' ) $data_identifier = 'HOM05D000646' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 19, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 3, 'bvu' => (int) 10, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 6, 'mdo' => (int) 16, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 11, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1